recipe bioconductor-glimma

Interactive HTML graphics

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/Glimma.html

License:

GPL-3

Recipe:

/bioconductor-glimma/meta.yaml

Links:

biotools: glimma, doi: 10.1101/096107

This package generates interactive visualisations for analysis of RNA-sequencing data using output from limma, edgeR or DESeq2 packages in an HTML page. The interactions are built on top of the popular static representations of analysis results in order to provide additional information.

package bioconductor-glimma

Versions:

2.8.0-0,  2.4.0-0,  2.2.0-0,  2.0.0-1,  2.0.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.1-0, 

2.8.0-0,  2.4.0-0,  2.2.0-0,  2.0.0-1,  2.0.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.1-0,  1.10.0-0,  1.8.2-0,  1.6.0-0

Depends:

• bioconductor-deseq2 >=1.38.0,<1.39.0

• bioconductor-edger >=3.40.0,<3.41.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-htmlwidgets

• r-jsonlite

Required By:

• bioconductor-affycoretools

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-glimma

and update with:

conda update bioconductor-glimma

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-glimma:<tag>

(see bioconductor-glimma/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-glimma/README.html)