recipe bioconductor-gmapr

GSNAP and GMAP are a pair of tools to align short-read data written by Tom Wu. This package provides convenience methods to work with GMAP and GSNAP from within R. In addition, it provides methods to tally alignment results on a per-nucleotide basis using the bam_tally tool.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/gmapR.html

License

Artistic-2.0

Recipe

/bioconductor-gmapr/meta.yaml

package bioconductor-gmapr

(downloads) docker_bioconductor-gmapr

Versions

1.26.0-1, 1.24.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gmapr

and update with:

conda update bioconductor-gmapr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gmapr:<tag>

(see bioconductor-gmapr/tags for valid values for <tag>)