recipe bioconductor-gmicr

Combines WGCNA and xCell readouts with bayesian network learrning to generate a Gene-Module Immune-Cell network (GMIC)

Homepage

https://bioconductor.org/packages/3.11/bioc/html/GmicR.html

License

GPL-2 + file LICENSE

Recipe

/bioconductor-gmicr/meta.yaml

This package uses bayesian network learning to detect relationships between Gene Modules detected by WGCNA and immune cell signatures defined by xCell. It is a hypothesis generating tool.

package bioconductor-gmicr

(downloads) docker_bioconductor-gmicr

Versions

1.2.0-01.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gmicr

and update with:

conda update bioconductor-gmicr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gmicr:<tag>

(see bioconductor-gmicr/tags for valid values for <tag>)