recipe bioconductor-gmrp

GWAS-based Mendelian Randomization and Path Analyses

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/GMRP.html

License:

GPL (>= 2)

Recipe:

/bioconductor-gmrp/meta.yaml

Links:

biotools: gmrp, doi: 10.1038/nmeth.3252

Perform Mendelian randomization analysis of multiple SNPs to determine risk factors causing disease of study and to exclude confounding variabels and perform path analysis to construct path of risk factors to the disease.

package bioconductor-gmrp

(downloads) docker_bioconductor-gmrp

versions:
1.30.0-0,  1.28.0-0,  1.26.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0, 

1.30.0-0,  1.28.0-0,  1.26.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.1-0,  1.8.1-0,  1.5.0-0

depends bioconductor-genomicranges:

>=1.54.0,<1.55.0

depends r-base:

>=4.3,<4.4.0a0

depends r-diagram:

depends r-plotrix:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-gmrp

and update with::

   mamba update bioconductor-gmrp

To create a new environment, run:

mamba create --name myenvname bioconductor-gmrp

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-gmrp:<tag>

(see `bioconductor-gmrp/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gmrp/README.html)