recipe bioconductor-gopro

Find the most characteristic gene ontology terms for groups of human genes. This package was created as a part of the thesis which was developed under the auspices of MI^2 Group (http://mi2.mini.pw.edu.pl/, https://github.com/geneticsMiNIng).

Homepage

https://bioconductor.org/packages/3.9/bioc/html/GOpro.html

License

GPL-3

Recipe

/bioconductor-gopro/meta.yaml

package bioconductor-gopro

(downloads) docker_bioconductor-gopro

Versions

1.8.0-0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-go.db

>=3.7.0,<3.8.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-multiassayexperiment

>=1.8.0,<1.9.0

Depends bioconductor-org.hs.eg.db

>=3.7.0,<3.8.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-bh

Depends r-dendextend

Depends r-doparallel

Depends r-foreach

Depends r-rcpp

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gopro

and update with:

conda update bioconductor-gopro

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gopro:<tag>

(see bioconductor-gopro/tags for valid values for <tag>)