recipe bioconductor-gosim

This package implements several functions useful for computing similarities between GO terms and gene products based on their GO annotation. Moreover it allows for computing a GO enrichment analysis

Homepage

https://bioconductor.org/packages/3.9/bioc/html/GOSim.html

License

GPL (>= 2)

Recipe

/bioconductor-gosim/meta.yaml

package bioconductor-gosim

(downloads) docker_bioconductor-gosim

Versions

1.20.0-0

Depends bioconductor-annotate

>=1.60.0,<1.61.0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-go.db

>=3.7.0,<3.8.0

Depends bioconductor-graph

>=1.60.0,<1.61.0

Depends bioconductor-org.hs.eg.db

>=3.7.0,<3.8.0

Depends bioconductor-rbgl

>=1.58.0,<1.59.0

Depends bioconductor-topgo

>=2.34.0,<2.35.0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-cluster

Depends r-corpcor

Depends r-flexmix

Depends r-matrix

Depends r-rcpp

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gosim

and update with:

conda update bioconductor-gosim

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gosim:<tag>

(see bioconductor-gosim/tags for valid values for <tag>)