recipe bioconductor-gosummaries

Word cloud summaries of GO enrichment analysis

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/GOsummaries.html

License:

GPL (>= 2)

Recipe:

/bioconductor-gosummaries/meta.yaml

A package to visualise Gene Ontology (GO) enrichment analysis results on gene lists arising from different analyses such clustering or PCA. The significant GO categories are visualised as word clouds that can be combined with different plots summarising the underlying data.

package bioconductor-gosummaries

versions:

2.37.0-0,  2.36.0-0,  2.34.0-1,  2.34.0-0,  2.30.0-2,  2.30.0-1,  2.30.0-0,  2.28.0-0,  2.26.0-1, 

2.37.0-0,  2.36.0-0,  2.34.0-1,  2.34.0-0,  2.30.0-2,  2.30.0-1,  2.30.0-0,  2.28.0-0,  2.26.0-1,  2.26.0-0,  2.24.0-0,  2.22.0-0,  2.20.0-1,  2.20.0-0,  2.18.0-0

depends bioconductor-limma:

>=3.58.0,<3.59.0

depends bioconductor-limma:

>=3.58.1,<3.59.0a0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc-ng:

>=12

depends liblapack:

>=3.9.0,<4.0a0

depends libstdcxx-ng:

>=12

depends r-base:

>=4.3,<4.4.0a0

depends r-ggplot2:

depends r-gprofiler:

depends r-gtable:

depends r-plyr:

depends r-rcpp:

depends r-reshape2:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-gosummaries

and update with::

   mamba update bioconductor-gosummaries

To create a new environment, run:

mamba create --name myenvname bioconductor-gosummaries

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-gosummaries:<tag>

(see `bioconductor-gosummaries/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gosummaries/README.html)