recipe bioconductor-gosummaries

Word cloud summaries of GO enrichment analysis



GPL (>= 2)



A package to visualise Gene Ontology (GO) enrichment analysis results on gene lists arising from different analyses such clustering or PCA. The significant GO categories are visualised as word clouds that can be combined with different plots summarising the underlying data.

package bioconductor-gosummaries

(downloads) docker_bioconductor-gosummaries



depends bioconductor-limma:


depends bioconductor-limma:


depends libblas:


depends libgcc-ng:


depends liblapack:


depends libstdcxx-ng:


depends r-base:


depends r-ggplot2:

depends r-gprofiler:

depends r-gtable:

depends r-plyr:

depends r-rcpp:

depends r-reshape2:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-gosummaries

and update with::

   mamba update bioconductor-gosummaries

To create a new environment, run:

mamba create --name myenvname bioconductor-gosummaries

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-gosummaries/tags`_ for valid values for ``<tag>``)

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