recipe bioconductor-gpaexample

Example data for the GPA package (Genetic analysis incorporating Pleiotropy and Annotation)



GPL (>= 2)



Example data for the GPA package, consisting of the p-values of 1,219,805 SNPs for five psychiatric disorder GWAS from the psychiatric GWAS consortium (PGC), with the annotation data using genes preferentially expressed in the central nervous system (CNS).

package bioconductor-gpaexample

(downloads) docker_bioconductor-gpaexample



depends bioconductor-data-packages:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-gpaexample

and update with::

   mamba update bioconductor-gpaexample

To create a new environment, run:

mamba create --name myenvname bioconductor-gpaexample

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-gpaexample/tags`_ for valid values for ``<tag>``)

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