recipe bioconductor-granulator

Rapid benchmarking of methods for *in silico* deconvolution of bulk RNA-seq data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/granulator.html

License:

GPL-3

Recipe:

/bioconductor-granulator/meta.yaml

granulator is an R package for the cell type deconvolution of heterogeneous tissues based on bulk RNA-seq data or single cell RNA-seq expression profiles. The package provides a unified testing interface to rapidly run and benchmark multiple state-of-the-art deconvolution methods. Data for the deconvolution of peripheral blood mononuclear cells (PBMCs) into individual immune cell types is provided as well.

package bioconductor-granulator

(downloads) docker_bioconductor-granulator

Versions:

1.6.0-01.2.0-01.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-granulator

and update with:

conda update bioconductor-granulator

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-granulator:<tag>

(see bioconductor-granulator/tags for valid values for <tag>)

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