recipe bioconductor-graph

graph: A package to handle graph data structures

Homepage

https://bioconductor.org/packages/3.13/bioc/html/graph.html

License

Artistic-2.0

Recipe

/bioconductor-graph/meta.yaml

Links

biotools: graph, doi: 10.1038/nmeth.3252

A package that implements some simple graph handling capabilities.

package bioconductor-graph

Versions

1.70.0-0,  1.68.0-1,  1.68.0-0,  1.66.0-0,  1.64.0-0,  1.62.0-1,  1.60.0-0,  1.58.2-0,  1.56.0-0, 

1.70.0-0,  1.68.0-1,  1.68.0-0,  1.66.0-0,  1.64.0-0,  1.62.0-1,  1.60.0-0,  1.58.2-0,  1.56.0-0,  1.54.0-0,  1.50.0-1,  1.48.0-1,  1.48.0-0

Depends

• bioconductor-biocgenerics >=0.38.0,<0.39.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=9.3.0

• liblapack >=3.8.0,<4.0a0

• r-base >=4.1,<4.2.0a0

Required By

• bioconductor-bgeedb

• bioconductor-migsa

• bioconductor-grridge

• bioconductor-phenstat

• bioconductor-rsbml

• bioconductor-opossom

• bioconductor-ppidata

• uropa

• bioconductor-eventpointer

• bioconductor-trackviewer

• bioconductor-cnorfeeder

• bioconductor-opencyto

• bioconductor-pathrender

• bioconductor-variantfiltering

• bioconductor-hyperdraw

• bioconductor-ontoproc

• bioconductor-hypergraph

• bioconductor-rdavidwebservice

• bioconductor-streamer

• bioconductor-dapar

• bioconductor-pwomics

• bioconductor-rontotools

• r-grain

• bioconductor-maigespack

• bioconductor-flowutils

• bioconductor-dce

• bioconductor-mnem

• bioconductor-gage

• bioconductor-ncigraph

• bioconductor-vtpnet

• bioconductor-flowcl

• bioconductor-epinem

• bioconductor-rbcbook1

• r-codedepends

• bioconductor-potra

• bioconductor-rbioinf

• bioconductor-netresponse

• bioconductor-cytoml

• bioconductor-enrichmentbrowser

• bioconductor-topgo

• bioconductor-splicinggraphs

• bioconductor-graphite

• bioconductor-gaggle

• bioconductor-apcomplex

• bioconductor-degraph

• bioconductor-alpine

• bioconductor-desubs

• bioconductor-flowmerge

• bioconductor-bioconcotk

• bioconductor-fgga

• bioconductor-yeastexpdata

• bioconductor-chimeraviz

• bioconductor-bioccheck

• bioconductor-bnem

• bioconductor-graphat

• bioconductor-biocviews

• bioconductor-keggorthology

• bioconductor-blma

• bioconductor-flowclust

• bioconductor-category

• r-hemdag

• bioconductor-oncosimulr

• bioconductor-neighbornet

• bioconductor-rbgl

• bioconductor-organismdbi

• bioconductor-sradb

• bioconductor-genenetworkbuilder

• r-pcalg

• bioconductor-rcy3

• bioconductor-mineica

• bioconductor-biocpkgtools

• bioconductor-cellnoptr

• bioconductor-biocgraph

• bioconductor-bionet

• bioconductor-mirintegrator

• bioconductor-gostats

• bioconductor-gosim

• bioconductor-rgraphviz

• bioconductor-kegggraph

• bioconductor-pathview

• r-grbase

• bioconductor-snadata

• r-dnet

• bioconductor-annotationhubdata

• bioconductor-rpsixml

• bioconductor-pfp

• r-perfmeas

• bioconductor-qpgraph

• bioconductor-pigengene

• bioconductor-rcyjs

• bioconductor-topaseq

• bioconductor-flowworkspace

• bioconductor-gapgom

• bioconductor-chippeakanno

• bioconductor-biomvcclass

• bioconductor-camera

• bioconductor-gseabase

• bioconductor-pkgdeptools

• bioconductor-rtreemix

• bioconductor-chronos

• bioconductor-rgraph2js

• bioconductor-clipper

• bioconductor-ppistats

• bioconductor-categorycompare

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-graph

and update with:

conda update bioconductor-graph

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-graph:<tag>

(see bioconductor-graph/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-graph/README.html)