recipe bioconductor-graphalignment

GraphAlignment

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/GraphAlignment.html

License:

file LICENSE

Recipe:

/bioconductor-graphalignment/meta.yaml

Graph alignment is an extension package for the R programming environment which provides functions for finding an alignment between two networks based on link and node similarity scores. (J. Berg and M. Laessig, "Cross-species analysis of biological networks by Bayesian alignment", PNAS 103 (29), 10967-10972 (2006))

package bioconductor-graphalignment

(downloads) docker_bioconductor-graphalignment

versions:
1.66.0-1,  1.66.0-0,  1.64.0-0,  1.62.0-2,  1.62.0-1,  1.62.0-0,  1.58.0-2,  1.58.0-1,  1.58.0-0, 

1.66.0-1,  1.66.0-0,  1.64.0-0,  1.62.0-2,  1.62.0-1,  1.62.0-0,  1.58.0-2,  1.58.0-1,  1.58.0-0,  1.56.0-0,  1.54.0-1,  1.54.0-0,  1.52.0-0,  1.50.0-0,  1.48.0-1,  1.48.0-0,  1.46.0-0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc-ng:

>=12

depends liblapack:

>=3.9.0,<4.0a0

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-graphalignment

and update with::

   mamba update bioconductor-graphalignment

To create a new environment, run:

mamba create --name myenvname bioconductor-graphalignment

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-graphalignment:<tag>

(see `bioconductor-graphalignment/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-graphalignment/README.html)