recipe bioconductor-graphpac

Identification of Mutational Clusters in Proteins via a Graph Theoretical Approach.

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/GraphPAC.html

License:

GPL-2

Recipe:

/bioconductor-graphpac/meta.yaml

Links:

biotools: graphpac, doi: 10.1186/1471-2105-15-86

Identifies mutational clusters of amino acids in a protein while utilizing the proteins tertiary structure via a graph theoretical model.

package bioconductor-graphpac

(downloads) docker_bioconductor-graphpac

versions:
1.44.0-0,  1.42.0-0,  1.40.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-0, 

1.44.0-0,  1.42.0-0,  1.40.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.24.0-0,  1.22.1-0,  1.20.0-0

depends bioconductor-ipac:

>=1.46.0,<1.47.0

depends r-base:

>=4.3,<4.4.0a0

depends r-igraph:

depends r-rmallow:

depends r-tsp:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-graphpac

and update with::

   mamba update bioconductor-graphpac

To create a new environment, run:

mamba create --name myenvname bioconductor-graphpac

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-graphpac:<tag>

(see `bioconductor-graphpac/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-graphpac/README.html)