recipe bioconductor-gsca

GSCA: Gene Set Context Analysis

Homepage

https://bioconductor.org/packages/3.11/bioc/html/GSCA.html

License

GPL(>=2)

Recipe

/bioconductor-gsca/meta.yaml

Links

biotools: gsca

GSCA takes as input several lists of activated and repressed genes. GSCA then searches through a compendium of publicly available gene expression profiles for biological contexts that are enriched with a specified pattern of gene expression. GSCA provides both traditional R functions and interactive, user-friendly user interface.

package bioconductor-gsca

(downloads) docker_bioconductor-gsca

Versions

2.17.0-02.16.0-02.14.0-12.14.0-02.12.0-12.12.0-02.10.0-02.8.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gsca

and update with:

conda update bioconductor-gsca

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gsca:<tag>

(see bioconductor-gsca/tags for valid values for <tag>)