recipe bioconductor-gscreend

Analysis of pooled genetic screens

Homepage

https://bioconductor.org/packages/3.11/bioc/html/gscreend.html

License

GPL-3

Recipe

/bioconductor-gscreend/meta.yaml

Package for the analysis of pooled genetic screens (e.g. CRISPR-KO). The analysis of such screens is based on the comparison of gRNA abundances before and after a cell proliferation phase. The gscreend packages takes gRNA counts as input and allows detection of genes whose knockout decreases or increases cell proliferation.

package bioconductor-gscreend

(downloads) docker_bioconductor-gscreend

Versions

1.2.0-0, 1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gscreend

and update with:

conda update bioconductor-gscreend

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gscreend:<tag>

(see bioconductor-gscreend/tags for valid values for <tag>)