recipe bioconductor-gse13015

GEO accession data GSE13015_GPL6106 as a SummarizedExperiment

Homepage

https://bioconductor.org/packages/3.14/data/experiment/html/GSE13015.html

License

MIT License

Recipe

/bioconductor-gse13015/meta.yaml

Microarray expression matrix platform GPL6106 and clinical data for 67 septicemic patients and made them available as GEO accession [GSE13015](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE13015). GSE13015 data have been parsed into a SummarizedExperiment object available in ExperimentHub. This data data could be used as an example supporting BloodGen3Module R package.

package bioconductor-gse13015

Versions

1.2.0-0,  1.0.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-geoquery >=2.62.0,<2.63.0

• bioconductor-preprocesscore >=1.56.0,<1.57.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• curl >=7.79.1,<8.0a0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gse13015

and update with:

conda update bioconductor-gse13015

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gse13015:<tag>

(see bioconductor-gse13015/tags for valid values for <tag>)

Download stats

Link to this page

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