- recipe bioconductor-gse159526
Placental cell DNA methylation data from GEO accession GSE159526
- Homepage:
https://bioconductor.org/packages/3.16/data/experiment/html/GSE159526.html
- License:
MIT + file LICENSE
- Recipe:
19 term and 9 first trimester placental chorionic villi and matched cell-sorted samples ran on Illumina HumanMethylationEPIC DNA methylation microarrays. This data was made available on GEO accession [GSE159526](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE159526). Both the raw and processed data has been made available on \code{ExperimentHub}. Raw unprocessed data formatted as an RGChannelSet object for integration and normalization using minfi and other existing Bioconductor packages. Processed normalized data is also available as a DNA methylation \code{matrix}, with a corresponding phenotype information as a \code{data.frame} object.
- package bioconductor-gse159526¶
-
- Versions:
1.3.0-0
,1.0.0-1
,1.0.0-0
- Depends:
bioconductor-data-packages
>=20221103
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-gse159526
and update with:
conda update bioconductor-gse159526
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-gse159526:<tag>
(see bioconductor-gse159526/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-gse159526/README.html)