recipe bioconductor-gse159526

Placental cell DNA methylation data from GEO accession GSE159526

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/GSE159526.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-gse159526/meta.yaml

19 term and 9 first trimester placental chorionic villi and matched cell-sorted samples ran on Illumina HumanMethylationEPIC DNA methylation microarrays. This data was made available on GEO accession [GSE159526](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE159526). Both the raw and processed data has been made available on \code{ExperimentHub}. Raw unprocessed data formatted as an RGChannelSet object for integration and normalization using minfi and other existing Bioconductor packages. Processed normalized data is also available as a DNA methylation \code{matrix}, with a corresponding phenotype information as a \code{data.frame} object.

package bioconductor-gse159526

(downloads) docker_bioconductor-gse159526

Versions:

1.3.0-0,  1.0.0-1,  1.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-gse159526

and update with:

conda update bioconductor-gse159526

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gse159526:<tag>

(see bioconductor-gse159526/tags for valid values for <tag>)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gse159526/README.html)