recipe bioconductor-gsean

Gene Set Enrichment Analysis with Networks

Homepage

https://bioconductor.org/packages/3.12/bioc/html/gsean.html

License

Artistic-2.0

Recipe

/bioconductor-gsean/meta.yaml

Biological molecules in a living organism seldom work individually. They usually interact each other in a cooperative way. Biological process is too complicated to understand without considering such interactions. Thus, network-based procedures can be seen as powerful methods for studying complex process. However, many methods are devised for analyzing individual genes. It is said that techniques based on biological networks such as gene co-expression are more precise ways to represent information than those using lists of genes only. This package is aimed to integrate the gene expression and biological network. A biological network is constructed from gene expression data and it is used for Gene Set Enrichment Analysis.

package bioconductor-gsean

Versions

1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.0-0

Depends

• bioconductor-fgsea >=1.16.0,<1.17.0

• bioconductor-ppinfer >=1.16.0,<1.17.0

• r-base >=4.0,<4.1.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gsean

and update with:

conda update bioconductor-gsean

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gsean:<tag>

(see bioconductor-gsean/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gsean/README.html)