recipe bioconductor-guideseq

The package implements GUIDE-seq analysis workflow including functions for obtaining unique insertion sites (proxy of cleavage sites), estimating the locations of the insertion sites, aka, peaks, merging estimated insertion sites from plus and minus strand, and performing off target search of the extended regions around insertion sites.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/GUIDEseq.html

License

GPL (>= 2)

Recipe

/bioconductor-guideseq/meta.yaml

Links

biotools: guideseq, doi: 10.1186/s12864-017-3746-y

package bioconductor-guideseq

(downloads) docker_bioconductor-guideseq

Versions

1.14.0-1, 1.12.0-0, 1.10.0-0, 1.8.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-guideseq

and update with:

conda update bioconductor-guideseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-guideseq:<tag>

(see bioconductor-guideseq/tags for valid values for <tag>)