recipe bioconductor-guideseq

GUIDE-seq and PEtag-seq analysis pipeline

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/GUIDEseq.html

License:

GPL (>= 2)

Recipe:

/bioconductor-guideseq/meta.yaml

Links:

biotools: guideseq, doi: 10.1186/s12864-017-3746-y

The package implements GUIDE-seq and PEtag-seq analysis workflow including functions for filtering UMI and reads with low coverage, obtaining unique insertion sites (proxy of cleavage sites), estimating the locations of the insertion sites, aka, peaks, merging estimated insertion sites from plus and minus strand, and performing off target search of the extended regions around insertion sites.

package bioconductor-guideseq

(downloads) docker_bioconductor-guideseq

Versions:
1.28.0-01.24.0-01.22.0-01.20.0-11.20.0-01.18.0-01.16.0-01.14.0-11.12.0-0

1.28.0-01.24.0-01.22.0-01.20.0-11.20.0-01.18.0-01.16.0-01.14.0-11.12.0-01.10.0-01.8.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-guideseq

and update with:

conda update bioconductor-guideseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-guideseq:<tag>

(see bioconductor-guideseq/tags for valid values for <tag>)

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