recipe bioconductor-gwascat

representing and modeling data in the EMBL-EBI GWAS catalog

Homepage

https://bioconductor.org/packages/3.13/bioc/html/gwascat.html

License

Artistic-2.0

Recipe

/bioconductor-gwascat/meta.yaml

Represent and model data in the EMBL-EBI GWAS catalog.

package bioconductor-gwascat

Versions

2.24.0-0,  2.22.0-1,  2.22.0-0,  2.20.1-0,  2.18.0-0,  2.16.0-1,  2.14.0-0

Depends

• bioconductor-annotationdbi >=1.54.0,<1.55.0

• bioconductor-annotationhub >=3.0.0,<3.1.0

• bioconductor-biocfilecache >=2.0.0,<2.1.0

• bioconductor-biostrings >=2.60.0,<2.61.0

• bioconductor-genomeinfodb >=1.28.0,<1.29.0

• bioconductor-genomicfeatures >=1.44.0,<1.45.0

• bioconductor-genomicranges >=1.44.0,<1.45.0

• bioconductor-iranges >=2.26.0,<2.27.0

• bioconductor-s4vectors >=0.30.0,<0.31.0

• bioconductor-snpstats >=1.42.0,<1.43.0

• bioconductor-variantannotation >=1.38.0,<1.39.0

• r-base >=4.1,<4.2.0a0

• r-readr

Required By

• bioconductor-circrnaprofiler

• bioconductor-vtpnet

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gwascat

and update with:

conda update bioconductor-gwascat

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gwascat:<tag>

(see bioconductor-gwascat/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gwascat/README.html)