recipe bioconductor-gwascat

representing and modeling data in the EMBL-EBI GWAS catalog

Homepage

https://bioconductor.org/packages/3.11/bioc/html/gwascat.html

License

Artistic-2.0

Recipe

/bioconductor-gwascat/meta.yaml

Represent and model data in the EMBL-EBI GWAS catalog.

package bioconductor-gwascat

Versions

2.20.1-0,  2.18.0-0,  2.16.0-1,  2.14.0-0

Depends

• bioconductor-annotationdbi >=1.50.0,<1.51.0

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-biostrings >=2.56.0,<2.57.0

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-genomicfeatures >=1.40.0,<1.41.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-rsamtools >=2.4.0,<2.5.0

• bioconductor-rtracklayer >=1.48.0,<1.49.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• r-base >=4.0,<4.1.0a0

• r-ggplot2

Required By

• bioconductor-circrnaprofiler

• bioconductor-vtpnet

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gwascat

and update with:

conda update bioconductor-gwascat

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gwascat:<tag>

(see bioconductor-gwascat/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gwascat/README.html)