recipe bioconductor-gwascatdata

A text file in cloud with March 30 2021 snapshot of EBI/EMBL GWAS catalog






This package manages a text file in cloud with March 30 2021 snapshot of EBI/EMBL GWAS catalog.This simplifies access to a snapshot of EBI GWASCAT. More current images can be obtained using the gwascat package.

package bioconductor-gwascatdata

(downloads) docker_bioconductor-gwascatdata



depends bioconductor-data-packages:


depends curl:

depends r-base:


depends r-data.table:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-gwascatdata

and update with::

   mamba update bioconductor-gwascatdata

To create a new environment, run:

mamba create --name myenvname bioconductor-gwascatdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-gwascatdata/tags`_ for valid values for ``<tag>``)

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