recipe bioconductor-gwasdata

Data used in the examples and vignettes of the GWASTools package






Selected Affymetrix and Illlumina SNP data for HapMap subjects. Data provided by the Center for Inherited Disease Research at Johns Hopkins University and the Broad Institute of MIT and Harvard University.

package bioconductor-gwasdata

(downloads) docker_bioconductor-gwasdata



depends bioconductor-data-packages:


depends bioconductor-gwastools:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-gwasdata

and update with::

   mamba update bioconductor-gwasdata

To create a new environment, run:

mamba create --name myenvname bioconductor-gwasdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-gwasdata/tags`_ for valid values for ``<tag>``)

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