recipe bioconductor-gwastools

Tools for Genome Wide Association Studies

Homepage

https://bioconductor.org/packages/3.11/bioc/html/GWASTools.html

License

Artistic-2.0

Recipe

/bioconductor-gwastools/meta.yaml

Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis.

package bioconductor-gwastools

Versions

1.34.0-0, 1.32.0-0, 1.30.0-1, 1.28.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-dnacopy >=1.62.0,<1.63.0

• bioconductor-gdsfmt >=1.24.0,<1.25.0

• bioconductor-quantsmooth >=1.54.0,<1.55.0

• r-base >=4.0,<4.1.0a0

• r-dbi

• r-dplyr

• r-gwasexacthw

• r-lmtest

• r-logistf

• r-rsqlite

• r-sandwich

• r-survival

Required By

• bioconductor-gwasdata

• bioconductor-genesis

• bioconductor-mbpcr

• bioconductor-gwasurvivr

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gwastools

and update with:

conda update bioconductor-gwastools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gwastools:<tag>

(see bioconductor-gwastools/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gwastools/README.html)