recipe bioconductor-gwastools

Tools for Genome Wide Association Studies

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/GWASTools.html

License:

Artistic-2.0

Recipe:

/bioconductor-gwastools/meta.yaml

Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis.

package bioconductor-gwastools

Versions:

1.44.0-0,  1.40.0-0,  1.38.0-0,  1.36.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.28.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-dnacopy >=1.72.0,<1.73.0

• bioconductor-gdsfmt >=1.34.0,<1.35.0

• bioconductor-quantsmooth >=1.64.0,<1.65.0

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-dbi

• r-gwasexacthw

• r-lmtest

• r-logistf

• r-rsqlite

• r-sandwich

• r-survival

Required By:

• bioconductor-genesis

• bioconductor-gwasdata

• bioconductor-gwasurvivr

• bioconductor-mbpcr

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-gwastools

and update with:

conda update bioconductor-gwastools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gwastools:<tag>

(see bioconductor-gwastools/tags for valid values for <tag>)

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