recipe bioconductor-h5vc

Managing alignment tallies using a hdf5 backend

Homepage

https://bioconductor.org/packages/3.13/bioc/html/h5vc.html

License

GPL (>= 3)

Recipe

/bioconductor-h5vc/meta.yaml

This package contains functions to interact with tally data from NGS experiments that is stored in HDF5 files.

package bioconductor-h5vc

Versions

2.26.1-0,  2.24.0-1,  2.24.0-0,  2.22.0-0,  2.20.0-1,  2.18.0-1,  2.16.0-0

Depends

• bioconductor-biocparallel >=1.26.0,<1.27.0

• bioconductor-biostrings >=2.60.0,<2.61.0

• bioconductor-genomeinfodb >=1.28.0,<1.29.0

• bioconductor-genomicranges >=1.44.0,<1.45.0

• bioconductor-h5vcdata >=2.12.0,<2.13.0

• bioconductor-iranges >=2.26.0,<2.27.0

• bioconductor-rhdf5 >=2.36.0,<2.37.0

• bioconductor-rhtslib >=1.24.0,<1.25.0

• bioconductor-rsamtools >=2.8.0,<2.9.0

• bioconductor-s4vectors >=0.30.0,<0.31.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=9.3.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=9.3.0

• r-abind

• r-base >=4.1,<4.2.0a0

• r-batchjobs

• r-ggplot2

• r-gridextra

• r-reshape

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-h5vc

and update with:

conda update bioconductor-h5vc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-h5vc:<tag>

(see bioconductor-h5vc/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

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