recipe bioconductor-h5vc

Managing alignment tallies using a hdf5 backend

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/h5vc.html

License:

GPL (>= 3)

Recipe:

/bioconductor-h5vc/meta.yaml

This package contains functions to interact with tally data from NGS experiments that is stored in HDF5 files.

package bioconductor-h5vc

Versions:

2.32.0-0,  2.28.0-2,  2.28.0-1,  2.28.0-0,  2.26.1-0,  2.24.0-1,  2.24.0-0,  2.22.0-0,  2.20.0-1, 

2.32.0-0,  2.28.0-2,  2.28.0-1,  2.28.0-0,  2.26.1-0,  2.24.0-1,  2.24.0-0,  2.22.0-0,  2.20.0-1,  2.18.0-1,  2.16.0-0

Depends:

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-h5vcdata >=2.18.0,<2.19.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rhdf5 >=2.42.0,<2.43.0

• bioconductor-rhtslib >=2.0.0,<2.1.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-abind

• r-base >=4.2,<4.3.0a0

• r-batchjobs

• r-ggplot2

• r-gridextra

• r-reshape

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-h5vc

and update with:

conda update bioconductor-h5vc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-h5vc:<tag>

(see bioconductor-h5vc/tags for valid values for <tag>)

Download stats

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