recipe bioconductor-h5vc

This package contains functions to interact with tally data from NGS experiments that is stored in HDF5 files.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/h5vc.html

License

GPL (>= 3)

Recipe

/bioconductor-h5vc/meta.yaml

package bioconductor-h5vc

(downloads) docker_bioconductor-h5vc

Versions

2.16.0-0

Depends bioconductor-biocparallel

>=1.16.0,<1.17.0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-genomeinfodb

>=1.18.0,<1.19.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-h5vcdata

>=2.2.0,<2.3.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-rhdf5

>=2.26.0,<2.27.0

Depends bioconductor-rsamtools

>=1.34.0,<1.35.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends r-abind

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-batchjobs

Depends r-ggplot2

Depends r-gridextra

Depends r-reshape

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-h5vc

and update with:

conda update bioconductor-h5vc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-h5vc:<tag>

(see bioconductor-h5vc/tags for valid values for <tag>)