recipe bioconductor-h5vc

Managing alignment tallies using a hdf5 backend

Homepage

https://bioconductor.org/packages/3.11/bioc/html/h5vc.html

License

GPL (>= 3)

Recipe

/bioconductor-h5vc/meta.yaml

This package contains functions to interact with tally data from NGS experiments that is stored in HDF5 files.

package bioconductor-h5vc

Versions

2.22.0-0, 2.20.0-1, 2.18.0-1, 2.16.0-0

Depends

• bioconductor-biocparallel >=1.22.0,<1.23.0

• bioconductor-biostrings >=2.56.0,<2.57.0

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-h5vcdata >=2.8.0,<2.9.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-rhdf5 >=2.32.0,<2.33.0

• bioconductor-rhtslib >=1.20.0,<1.21.0

• bioconductor-rsamtools >=2.4.0,<2.5.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.3.0

• liblapack >=3.8.0,<3.9.0a0

• libstdcxx-ng >=7.3.0

• r-abind

• r-base >=4.0,<4.1.0a0

• r-batchjobs

• r-ggplot2

• r-gridextra

• r-reshape

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-h5vc

and update with:

conda update bioconductor-h5vc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-h5vc:<tag>

(see bioconductor-h5vc/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-h5vc/README.html)