Package Recipe 'bioconductor-h5vc'

recipe bioconductor-h5vc¶

This package contains functions to interact with tally data from NGS experiments that is stored in HDF5 files.

Homepage: https://bioconductor.org/packages/3.9/bioc/html/h5vc.html
License: GPL (>= 3)
Recipe: /bioconductor-h5vc/meta.yaml

package bioconductor-h5vc¶

Versions: 2.16.0-0
Depends bioconductor-biocparallel: >=1.16.0,<1.17.0
Depends bioconductor-biostrings: >=2.50.0,<2.51.0
Depends bioconductor-genomeinfodb: >=1.18.0,<1.19.0
Depends bioconductor-genomicranges: >=1.34.0,<1.35.0
Depends bioconductor-h5vcdata: >=2.2.0,<2.3.0
Depends bioconductor-iranges: >=2.16.0,<2.17.0
Depends bioconductor-rhdf5: >=2.26.0,<2.27.0
Depends bioconductor-rsamtools: >=1.34.0,<1.35.0
Depends bioconductor-s4vectors: >=0.20.0,<0.21.0
Depends libgcc-ng: >=7.3.0
Depends libstdcxx-ng: >=7.3.0
Depends r-abind
Depends r-base: >=3.5.1,<3.5.2.0a0
Depends r-batchjobs
Depends r-ggplot2
Depends r-gridextra
Depends r-reshape
Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-h5vc

and update with:

conda update bioconductor-h5vc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-h5vc:<tag>

(see bioconductor-h5vc/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-h5vc/README.html)