recipe bioconductor-h5vc

Managing alignment tallies using a hdf5 backend

Homepage

https://bioconductor.org/packages/3.10/bioc/html/h5vc.html

License

GPL (>= 3)

Recipe

/bioconductor-h5vc/meta.yaml

This package contains functions to interact with tally data from NGS experiments that is stored in HDF5 files.

package bioconductor-h5vc

Versions

2.20.0-1, 2.18.0-1, 2.16.0-0

Depends

• bioconductor-biocparallel >=1.20.0,<1.21.0

• bioconductor-biostrings >=2.54.0,<2.55.0

• bioconductor-genomeinfodb >=1.22.0,<1.23.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-h5vcdata >=2.6.0,<2.7.0

• bioconductor-iranges >=2.20.0,<2.21.0

• bioconductor-rhdf5 >=2.30.0,<2.31.0

• bioconductor-rhtslib >=1.18.0,<1.19.0

• bioconductor-rsamtools >=2.2.0,<2.3.0

• bioconductor-s4vectors >=0.24.0,<0.25.0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• r-abind

• r-base >=3.6,<3.7.0a0

• r-batchjobs

• r-ggplot2

• r-gridextra

• r-reshape

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-h5vc

and update with:

conda update bioconductor-h5vc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-h5vc:<tag>

(see bioconductor-h5vc/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-h5vc/README.html)