- recipe bioconductor-h5vc
Managing alignment tallies using a hdf5 backend
- Homepage:
- License:
GPL (>= 3)
- Recipe:
This package contains functions to interact with tally data from NGS experiments that is stored in HDF5 files.
- package bioconductor-h5vc¶
-
- Versions:
2.28.0-1
,2.28.0-0
,2.26.1-0
,2.24.0-1
,2.24.0-0
,2.22.0-0
,2.20.0-1
,2.18.0-1
,2.16.0-0
- Depends:
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-h5vcdata
>=2.14.0,<2.15.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-rhdf5
>=2.38.0,<2.39.0
bioconductor-rhtslib
>=1.26.0,<1.27.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=10.3.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-h5vc
and update with:
conda update bioconductor-h5vc
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-h5vc:<tag>
(see bioconductor-h5vc/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-h5vc/README.html)