-
recipe
bioconductor-harshlight¶ The package is used to detect extended, diffuse and compact blemishes on microarray chips. Harshlight automatically marks the areas in a collection of chips (affybatch objects) and a corrected AffyBatch object is returned, in which the defected areas are substituted with NAs or the median of the values of the same probe in the other chips in the collection. The new version handle the substitute value as whole matrix to solve the memory problem.
- Homepage
https://bioconductor.org/packages/3.9/bioc/html/Harshlight.html
- License
GPL (>= 2)
- Recipe
- Links
biotools: harshlight, doi: 10.1186/1471-2105-6-294
-
package
bioconductor-harshlight¶ 
- Versions
1.54.0-0, 1.52.0-0, 1.50.0-0
- Depends
bioconductor-affy >=1.60.0,<1.61.0
bioconductor-altcdfenvs >=2.44.0,<2.45.0
bioconductor-biobase >=2.42.0,<2.43.0
libgcc-ng >=7.3.0
r-base >=3.5.1,<3.5.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-harshlight
and update with:
conda update bioconductor-harshlight
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-harshlight:<tag>
(see bioconductor-harshlight/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-harshlight/README.html)