recipe bioconductor-harshlight

The package is used to detect extended, diffuse and compact blemishes on microarray chips. Harshlight automatically marks the areas in a collection of chips (affybatch objects) and a corrected AffyBatch object is returned, in which the defected areas are substituted with NAs or the median of the values of the same probe in the other chips in the collection. The new version handle the substitute value as whole matrix to solve the memory problem.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/Harshlight.html

License

GPL (>= 2)

Recipe

/bioconductor-harshlight/meta.yaml

Links

biotools: harshlight, doi: 10.1186/1471-2105-6-294

package bioconductor-harshlight

(downloads) docker_bioconductor-harshlight

Versions

1.54.0-0, 1.52.0-0, 1.50.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-harshlight

and update with:

conda update bioconductor-harshlight

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-harshlight:<tag>

(see bioconductor-harshlight/tags for valid values for <tag>)