recipe bioconductor-hcadata

Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/HCAData.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-hcadata/meta.yaml

This package allows a direct access to the dataset generated by the Human Cell Atlas project for further processing in R and Bioconductor, in the comfortable format of SingleCellExperiment objects (available in other formats here: http://preview.data.humancellatlas.org/).

package bioconductor-hcadata

Versions:

1.14.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-2,  1.6.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-1

Depends:

• bioconductor-annotationhub >=3.6.0,<3.7.0

• bioconductor-data-packages >=20221108

• bioconductor-experimenthub >=2.6.0,<2.7.0

• bioconductor-hdf5array >=1.26.0,<1.27.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-hcadata

and update with:

conda update bioconductor-hcadata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-hcadata:<tag>

(see bioconductor-hcadata/tags for valid values for <tag>)

Download stats

Link to this page

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