- recipe bioconductor-hcadata
Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor
- Homepage:
https://bioconductor.org/packages/3.14/data/experiment/html/HCAData.html
- License:
MIT + file LICENSE
- Recipe:
This package allows a direct access to the dataset generated by the Human Cell Atlas project for further processing in R and Bioconductor, in the comfortable format of SingleCellExperiment objects (available in other formats here: http://preview.data.humancellatlas.org/).
- package bioconductor-hcadata¶
-
- Versions:
1.10.0-0
,1.8.0-0
,1.6.0-2
,1.6.0-1
,1.4.0-0
,1.2.0-0
,1.0.0-1
- Depends:
bioconductor-annotationhub
>=3.2.0,<3.3.0
bioconductor-experimenthub
>=2.2.0,<2.3.0
bioconductor-hdf5array
>=1.22.0,<1.23.0
bioconductor-singlecellexperiment
>=1.16.0,<1.17.0
curl
>=7.79.1,<8.0a0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-hcadata
and update with:
conda update bioconductor-hcadata
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-hcadata:<tag>
(see bioconductor-hcadata/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-hcadata/README.html)