recipe bioconductor-hdf5array

HDF5 backend for DelayedArray objects

Homepage

https://bioconductor.org/packages/3.13/bioc/html/HDF5Array.html

License

Artistic-2.0

Recipe

/bioconductor-hdf5array/meta.yaml

Links

biotools: hdf5array, doi: 10.1038/nmeth.3252

Implement the HDF5Array, H5SparseMatrix, H5ADMatrix, and TENxMatrix classes, 4 convenient and memory-efficient array-like containers for representing and manipulating either: (1) a conventional (a.k.a. dense) HDF5 dataset, (2) an HDF5 sparse matrix (stored in CSR/CSC/Yale format), (3) the central matrix of an h5ad file (or any matrix in the /layers group), or (4) a 10x Genomics sparse matrix. All these containers are DelayedArray extensions and thus support all operations (delayed or block-processed) supported by DelayedArray objects.

package bioconductor-hdf5array

(downloads) docker_bioconductor-hdf5array

Versions

1.20.0-01.18.1-01.18.0-01.16.0-01.14.0-01.12.1-01.10.1-01.8.1-01.6.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-hdf5array

and update with:

conda update bioconductor-hdf5array

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-hdf5array:<tag>

(see bioconductor-hdf5array/tags for valid values for <tag>)