- recipe bioconductor-hdf5array
HDF5 backend for DelayedArray objects
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/HDF5Array.html
- License:
Artistic-2.0
- Recipe:
- Links:
biotools: hdf5array, doi: 10.1038/nmeth.3252
Implement the HDF5Array, H5SparseMatrix, H5ADMatrix, and TENxMatrix classes, 4 convenient and memory-efficient array-like containers for representing and manipulating either: (1) a conventional (a.k.a. dense) HDF5 dataset, (2) an HDF5 sparse matrix (stored in CSR/CSC/Yale format), (3) the central matrix of an h5ad file (or any matrix in the /layers group), or (4) a 10x Genomics sparse matrix. All these containers are DelayedArray extensions and thus support all operations (delayed or block-processed) supported by DelayedArray objects.
- package bioconductor-hdf5array¶
-
- Versions:
1.26.0-2
,1.26.0-1
,1.22.1-1
,1.22.1-0
,1.22.0-1
,1.20.0-1
,1.20.0-0
,1.18.1-0
,1.18.0-0
,1.26.0-2
,1.26.0-1
,1.22.1-1
,1.22.1-0
,1.22.0-1
,1.20.0-1
,1.20.0-0
,1.18.1-0
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.1-0
,1.10.1-0
,1.8.1-0
,1.6.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-delayedarray
>=0.24.0,<0.25.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rhdf5
>=2.42.0,<2.43.0
bioconductor-rhdf5filters
>=1.10.0,<1.11.0
bioconductor-rhdf5lib
>=1.20.0,<1.21.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
openssl
>=3.1.0,<4.0a0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-hdf5array
and update with:
conda update bioconductor-hdf5array
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-hdf5array:<tag>
(see bioconductor-hdf5array/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-hdf5array/README.html)