recipe bioconductor-heatmaps

Flexible Heatmaps for Functional Genomics and Sequence Features

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/heatmaps.html

License:

Artistic-2.0

Recipe:

/bioconductor-heatmaps/meta.yaml

This package provides functions for plotting heatmaps of genome-wide data across genomic intervals, such as ChIP-seq signals at peaks or across promoters. Many functions are also provided for investigating sequence features.

package bioconductor-heatmaps

Versions:

1.22.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.0-0, 

1.22.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-ebimage >=4.40.0,<4.41.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• r-base >=4.2,<4.3.0a0

• r-kernsmooth

• r-matrix

• r-plotrix

• r-rcolorbrewer

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-heatmaps

and update with:

conda update bioconductor-heatmaps

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-heatmaps:<tag>

(see bioconductor-heatmaps/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-heatmaps/README.html)