recipe bioconductor-helloranges

Introduce *Ranges to bedtools users

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/HelloRanges.html

License:

GPL (>= 2)

Recipe:

/bioconductor-helloranges/meta.yaml

Links:

biotools: helloranges, doi: 10.1038/nmeth.3252

Translates bedtools command-line invocations to R code calling functions from the Bioconductor *Ranges infrastructure. This is intended to educate novice Bioconductor users and to compare the syntax and semantics of the two frameworks.

package bioconductor-helloranges

Versions:

1.24.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0, 

1.24.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocio >=1.8.0,<1.9.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-variantannotation >=1.44.0,<1.45.0

• r-base >=4.2,<4.3.0a0

• r-docopt

Required By:

• bioconductor-omicspca

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-helloranges

and update with:

conda update bioconductor-helloranges

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-helloranges:<tag>

(see bioconductor-helloranges/tags for valid values for <tag>)

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Link to this page

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