recipe bioconductor-help

Tools for HELP data analysis

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/HELP.html

License:

GPL (>= 2)

Recipe:

/bioconductor-help/meta.yaml

Links:

biotools: help, doi: 10.1038/nmeth.3252

The package contains a modular pipeline for analysis of HELP microarray data, and includes graphical and mathematical tools with more general applications.

package bioconductor-help

versions:

1.60.0-0,  1.58.0-0,  1.56.0-0,  1.52.0-0,  1.50.0-0,  1.48.0-1,  1.48.0-0,  1.46.0-0,  1.44.0-0, 

1.60.0-0,  1.58.0-0,  1.56.0-0,  1.52.0-0,  1.50.0-0,  1.48.0-1,  1.48.0-0,  1.46.0-0,  1.44.0-0,  1.42.0-1,  1.40.0-1,  1.40.0-0,  1.38.0-0,  1.36.0-0

depends bioconductor-biobase:

>=2.62.0,<2.63.0

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-help

and update with::

   mamba update bioconductor-help

To create a new environment, run:

mamba create --name myenvname bioconductor-help

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-help:<tag>

(see `bioconductor-help/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-help/README.html)