recipe bioconductor-hicdcplus

Hi-C Direct Caller Plus

Homepage

https://bioconductor.org/packages/3.13/bioc/html/HiCDCPlus.html

License

GPL-3

Recipe

/bioconductor-hicdcplus/meta.yaml

Systematic 3D interaction calls and differential analysis for Hi-C and HiChIP. The HiC-DC+ (Hi-C/HiChIP direct caller plus) package enables principled statistical analysis of Hi-C and HiChIP data sets – including calling significant interactions within a single experiment and performing differential analysis between conditions given replicate experiments – to facilitate global integrative studies. HiC-DC+ estimates significant interactions in a Hi-C or HiChIP experiment directly from the raw contact matrix for each chromosome up to a specified genomic distance, binned by uniform genomic intervals or restriction enzyme fragments, by training a background model to account for random polymer ligation and systematic sources of read count variation.

package bioconductor-hicdcplus

(downloads) docker_bioconductor-hicdcplus

Versions

1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-hicdcplus

and update with:

conda update bioconductor-hicdcplus

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-hicdcplus:<tag>

(see bioconductor-hicdcplus/tags for valid values for <tag>)