recipe bioconductor-hipathia

HiPathia: High-throughput Pathway Analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/hipathia.html

License:

GPL-2

Recipe:

/bioconductor-hipathia/meta.yaml

Hipathia is a method for the computation of signal transduction along signaling pathways from transcriptomic data. The method is based on an iterative algorithm which is able to compute the signal intensity passing through the nodes of a network by taking into account the level of expression of each gene and the intensity of the signal arriving to it. It also provides a new approach to functional analysis allowing to compute the signal arriving to the functions annotated to each pathway.

package bioconductor-hipathia

Versions:

2.14.0-0,  2.10.0-0,  2.8.0-0,  2.6.0-1,  2.6.0-0,  2.4.0-0,  2.2.0-0,  2.0.0-1,  1.3.1-0

Depends:

• bioconductor-annotationhub >=3.6.0,<3.7.0

• bioconductor-delayedarray >=0.24.0,<0.25.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-multiassayexperiment >=1.24.0,<1.25.0

• bioconductor-preprocesscore >=1.60.0,<1.61.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-coin

• r-igraph >=1.0.1

• r-matrixstats

• r-servr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-hipathia

and update with:

conda update bioconductor-hipathia

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-hipathia:<tag>

(see bioconductor-hipathia/tags for valid values for <tag>)

Download stats

Link to this page

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