recipe bioconductor-hireadsprocessor

hiReadsProcessor contains set of functions which allow users to process LM-PCR products sequenced using any platform. Given an excel/txt file containing parameters for demultiplexing and sample metadata, the functions automate trimming of adaptors and identification of the genomic product. Genomic products are further processed for QC and abundance quantification.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/hiReadsProcessor.html

License

GPL-3

Recipe

/bioconductor-hireadsprocessor/meta.yaml

package bioconductor-hireadsprocessor

(downloads) docker_bioconductor-hireadsprocessor

Versions

1.20.1-0, 1.18.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-hireadsprocessor

and update with:

conda update bioconductor-hireadsprocessor

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-hireadsprocessor:<tag>

(see bioconductor-hireadsprocessor/tags for valid values for <tag>)