recipe bioconductor-hivcdnavantwout03

T cell line infections with HIV-1 LAI (BRU)

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/HIVcDNAvantWout03.html

License:

GPL (>= 2)

Recipe:

/bioconductor-hivcdnavantwout03/meta.yaml

The expression levels of approximately 4600 cellular RNA transcripts were assessed in CD4+ T cell lines at different times after infection with HIV-1BRU using DNA microarrays. This data corresponds to the first block of a 12 block array image (001030_08_1.GEL) in the first data set (2000095918 A) in the first experiment (CEM LAI vs HI-LAI 24hr). There are two data sets, which are part of a dye-swap experiment with replicates, representing the Cy3 (green) absorption intensities for channel 1 (hiv1raw) and the Cy5 (red) absorption intensities for channel 2 (hiv2raw).

package bioconductor-hivcdnavantwout03

(downloads) docker_bioconductor-hivcdnavantwout03

versions:
1.46.0-0,  1.42.0-0,  1.40.0-0,  1.37.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0, 

1.46.0-0,  1.42.0-0,  1.40.0-0,  1.37.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.29.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0

depends bioconductor-data-packages:

>=20241103

depends curl:

depends r-base:

>=4.4,<4.5.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-hivcdnavantwout03

and update with::

   mamba update bioconductor-hivcdnavantwout03

To create a new environment, run:

mamba create --name myenvname bioconductor-hivcdnavantwout03

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-hivcdnavantwout03:<tag>

(see `bioconductor-hivcdnavantwout03/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-hivcdnavantwout03/README.html)