recipe bioconductor-hmmcopy

Corrects GC and mappability biases for readcounts (i.e. coverage) in non-overlapping windows of fixed length for single whole genome samples, yielding a rough estimate of copy number for furthur analysis. Designed for rapid correction of high coverage whole genome tumour and normal samples.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/HMMcopy.html

License

GPL-3

Recipe

/bioconductor-hmmcopy/meta.yaml

Links

biotools: hmmcopy, doi: 10.1038/nmeth.3252

package bioconductor-hmmcopy

(downloads) docker_bioconductor-hmmcopy

Versions

1.24.0-0, 1.22.0-0, 1.20.0-0, 1.18.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-hmmcopy

and update with:

conda update bioconductor-hmmcopy

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-hmmcopy:<tag>

(see bioconductor-hmmcopy/tags for valid values for <tag>)