bioconductor-hmmcopy

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Corrects GC and mappability biases for readcounts (i.e. coverage) in non-overlapping windows of fixed length for single whole genome samples, yielding a rough estimate of copy number for furthur analysis. Designed for rapid correction of high coverage whole genome tumour and normal samples.

Home http://bioconductor.org/packages/3.6/bioc/html/HMMcopy.html
Versions 1.18.0, 1.20.0
License GPL-3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-hmmcopy

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-hmmcopy

and update with:

conda update bioconductor-hmmcopy

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-hmmcopy.