recipe bioconductor-hmp2data

16s rRNA sequencing data from the Human Microbiome Project 2

Homepage

https://bioconductor.org/packages/3.11/data/experiment/html/HMP2Data.html

License

Artistic-2.0

Recipe

/bioconductor-hmp2data/meta.yaml

HMP2Data is a Bioconductor package of the Human Microbiome Project 2 (HMP2) 16S rRNA sequencing data. Processed data is provided as phyloseq, SummarizedExperiment, and MultiAssayExperiment class objects. Individual matrices and data.frames used for building these S4 class objects are also provided in the package.

package bioconductor-hmp2data

Versions

1.1.0-0,  1.0.0-0

Depends

• bioconductor-annotationhub >=2.20.0,<2.21.0

• bioconductor-experimenthub >=1.14.0,<1.15.0

• bioconductor-multiassayexperiment >=1.14.0,<1.15.0

• bioconductor-phyloseq >=1.32.0,<1.33.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• curl >=7.69.1,<8.0a0

• r-assertthat

• r-base >=4.0,<4.1.0a0

• r-data.table

• r-dplyr

• r-kableextra

• r-knitr

• r-magrittr

• r-readr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-hmp2data

and update with:

conda update bioconductor-hmp2data

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-hmp2data:<tag>

(see bioconductor-hmp2data/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-hmp2data/README.html)