- recipe bioconductor-hmp2data
16s rRNA sequencing data from the Human Microbiome Project 2
- Homepage:
https://bioconductor.org/packages/3.16/data/experiment/html/HMP2Data.html
- License:
Artistic-2.0
- Recipe:
HMP2Data is a Bioconductor package of the Human Microbiome Project 2 (HMP2) 16S rRNA sequencing data. Processed data is provided as phyloseq, SummarizedExperiment, and MultiAssayExperiment class objects. Individual matrices and data.frames used for building these S4 class objects are also provided in the package.
- package bioconductor-hmp2data¶
-
- Versions:
1.12.0-0
,1.8.0-1
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.4.0-0
,1.1.0-0
,1.0.0-0
- Depends:
bioconductor-annotationhub
>=3.6.0,<3.7.0
bioconductor-data-packages
>=20221109
bioconductor-experimenthub
>=2.6.0,<2.7.0
bioconductor-multiassayexperiment
>=1.24.0,<1.25.0
bioconductor-phyloseq
>=1.42.0,<1.43.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-hmp2data
and update with:
conda update bioconductor-hmp2data
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-hmp2data:<tag>
(see bioconductor-hmp2data/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-hmp2data/README.html)