recipe bioconductor-hpastainr

Queries the Human Protein Atlas Staining Data for Multiple Proteins and Genes

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/HPAStainR.html

License:

Artistic-2.0

Recipe:

/bioconductor-hpastainr/meta.yaml

This package is built around the HPAStainR function. The purpose of the HPAStainR function is to query the visual staining data in the Human Protein Atlas to return a table of staining ranked cell types. The function also has multiple arguments to personalize to output as well to include cancer data, csv readable names, modify the confidence levels of the results and more. The other functions exist exclusively to easily acquire the data required to run HPAStainR.

package bioconductor-hpastainr

(downloads) docker_bioconductor-hpastainr

Versions:

1.8.0-01.4.0-01.2.0-01.0.3-01.0.0-1

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-hpastainr

and update with:

conda update bioconductor-hpastainr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-hpastainr:<tag>

(see bioconductor-hpastainr/tags for valid values for <tag>)

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