- recipe bioconductor-htseqgenie
A NGS analysis pipeline.
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/HTSeqGenie.html
- License:
Artistic-2.0
- Recipe:
Libraries to perform NGS analysis.
- package bioconductor-htseqgenie¶
-
- Versions:
4.24.0-0
,4.22.0-0
,4.20.0-1
,4.20.0-0
,4.18.0-0
,4.16.0-0
,4.14.0-1
,4.12.0-0
- Depends:
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-chipseq
>=1.44.0,<1.45.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicalignments
>=1.30.0,<1.31.0
bioconductor-genomicfeatures
>=1.46.0,<1.47.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-gmapr
>=1.36.0,<1.37.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-shortread
>=1.52.0,<1.53.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
bioconductor-variantannotation
>=1.40.0,<1.41.0
bioconductor-varianttools
>=1.36.0,<1.37.0
r-base
>=4.1,<4.2.0a0
r-cairo
>=1.5.5
r-hwriter
>=1.3.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-htseqgenie
and update with:
conda update bioconductor-htseqgenie
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-htseqgenie:<tag>
(see bioconductor-htseqgenie/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-htseqgenie/README.html)