recipe bioconductor-htseqgenie

A NGS analysis pipeline.

Homepage

https://bioconductor.org/packages/3.14/bioc/html/HTSeqGenie.html

License

Artistic-2.0

Recipe

/bioconductor-htseqgenie/meta.yaml

Libraries to perform NGS analysis.

package bioconductor-htseqgenie

Versions

4.24.0-0,  4.22.0-0,  4.20.0-1,  4.20.0-0,  4.18.0-0,  4.16.0-0,  4.14.0-1,  4.12.0-0

Depends

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-chipseq >=1.44.0,<1.45.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicalignments >=1.30.0,<1.31.0

• bioconductor-genomicfeatures >=1.46.0,<1.47.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-gmapr >=1.36.0,<1.37.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-rsamtools >=2.10.0,<2.11.0

• bioconductor-rtracklayer >=1.54.0,<1.55.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-shortread >=1.52.0,<1.53.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• bioconductor-variantannotation >=1.40.0,<1.41.0

• bioconductor-varianttools >=1.36.0,<1.37.0

• r-base >=4.1,<4.2.0a0

• r-cairo >=1.5.5

• r-hwriter >=1.3.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-htseqgenie

and update with:

conda update bioconductor-htseqgenie

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-htseqgenie:<tag>

(see bioconductor-htseqgenie/tags for valid values for <tag>)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-htseqgenie/README.html)