recipe bioconductor-htseqgenie

A NGS analysis pipeline.

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/HTSeqGenie.html

License:

Artistic-2.0

Recipe:

/bioconductor-htseqgenie/meta.yaml

Libraries to perform NGS analysis.

package bioconductor-htseqgenie

Versions:

4.27.0-0,  4.24.0-0,  4.22.0-0,  4.20.0-1,  4.20.0-0,  4.18.0-0,  4.16.0-0,  4.14.0-1,  4.12.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-chipseq >=1.48.0,<1.49.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-gmapr >=1.40.0,<1.41.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-shortread >=1.56.0,<1.57.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-variantannotation >=1.44.0,<1.45.0

• bioconductor-varianttools >=1.40.0,<1.41.0

• r-base >=4.2,<4.3.0a0

• r-cairo >=1.5.5

• r-hwriter >=1.3.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-htseqgenie

and update with:

conda update bioconductor-htseqgenie

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-htseqgenie:<tag>

(see bioconductor-htseqgenie/tags for valid values for <tag>)

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