recipe bioconductor-humanaffydata

GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects






Re-analysis of human gene expression data generated on the Affymetrix HG U133PlusV2 (EH176) and Affymetrix HG U133A (EH177) platforms. The original data were normalized using robust multiarray averaging (RMA) to obtain an integrated gene expression atlas across diverse biological sample types and conditions. The entire compendia comprisee 9395 arrays for EH176 and 5372 arrays for EH177.

package bioconductor-humanaffydata

(downloads) docker_bioconductor-humanaffydata



depends bioconductor-biobase:


depends bioconductor-data-packages:


depends bioconductor-experimenthub:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-humanaffydata

and update with::

   mamba update bioconductor-humanaffydata

To create a new environment, run:

mamba create --name myenvname bioconductor-humanaffydata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-humanaffydata/tags`_ for valid values for ``<tag>``)

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