bioconductor-ichip

downloads

This package uses hidden Ising models to identify enriched genomic regions in ChIP-chip data. It can be used to analyze the data from multiple platforms (e.g., Affymetrix, Agilent, and NimbleGen), and the data with single to multiple replicates.

Home http://bioconductor.org/packages/3.7/bioc/html/iChip.html
Versions 1.34.0, 1.32.0
License GPL (>= 2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-ichip
Links biotools: ichip, doi: 10.1093/bioinformatics/btq032

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ichip

and update with:

conda update bioconductor-ichip

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-ichip.