recipe bioconductor-icobra

Comparison and Visualization of Ranking and Assignment Methods

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/iCOBRA.html

License:

GPL (>=2)

Recipe:

/bioconductor-icobra/meta.yaml

Links:

biotools: icobra

This package provides functions for calculation and visualization of performance metrics for evaluation of ranking and binary classification (assignment) methods. Various types of performance plots can be generated programmatically. The package also contains a shiny application for interactive exploration of results.

package bioconductor-icobra

(downloads) docker_bioconductor-icobra

versions:
1.30.0-0,  1.28.0-0,  1.26.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0, 

1.30.0-0,  1.28.0-0,  1.26.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.1-0,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-0

depends bioconductor-limma:

>=3.58.0,<3.59.0

depends r-base:

>=4.3,<4.4.0a0

depends r-dplyr:

depends r-dt:

depends r-ggplot2:

>=2.0.0

depends r-markdown:

depends r-reshape2:

depends r-rocr:

depends r-scales:

depends r-shiny:

>=0.9.1.9008

depends r-shinybs:

depends r-shinydashboard:

depends r-upsetr:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-icobra

and update with::

   mamba update bioconductor-icobra

To create a new environment, run:

mamba create --name myenvname bioconductor-icobra

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-icobra:<tag>

(see `bioconductor-icobra/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-icobra/README.html)