recipe bioconductor-icobra

This package provides functions for calculation and visualization of performance metrics for evaluation of ranking and binary classification (assignment) methods. It also contains a shiny application for interactive exploration of results.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/iCOBRA.html

License

GPL (>=2)

Recipe

/bioconductor-icobra/meta.yaml

Links

biotools: icobra

package bioconductor-icobra

(downloads) docker_bioconductor-icobra

Versions

1.12.0-0, 1.10.0-0, 1.8.0-0, 1.6.0-0

Depends bioconductor-limma

>=3.40.0,<3.41.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-dplyr

Depends r-dt

Depends r-ggplot2

>=2.0.0

Depends r-reshape2

Depends r-rocr

Depends r-scales

Depends r-shiny

>=0.9.1.9008

Depends r-shinybs

Depends r-shinydashboard

Depends r-upsetr

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-icobra

and update with:

conda update bioconductor-icobra

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-icobra:<tag>

(see bioconductor-icobra/tags for valid values for <tag>)