recipe bioconductor-ideoviz

Plots data (continuous/discrete) along chromosomal ideogram

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/IdeoViz.html

License:

GPL-2

Recipe:

/bioconductor-ideoviz/meta.yaml

Links:

biotools: ideoviz, doi: 10.1038/nmeth.3252

Plots data associated with arbitrary genomic intervals along chromosomal ideogram.

package bioconductor-ideoviz

Versions:

1.34.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-0, 

1.34.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-0,  1.16.0-0,  1.10.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• r-base >=4.2,<4.3.0a0

• r-rcolorbrewer

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ideoviz

and update with:

conda update bioconductor-ideoviz

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ideoviz:<tag>

(see bioconductor-ideoviz/tags for valid values for <tag>)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ideoviz/README.html)