recipe bioconductor-ideoviz

Plots data (continuous/discrete) along chromosomal ideogram

Homepage

https://bioconductor.org/packages/3.10/bioc/html/IdeoViz.html

License

GPL-2

Recipe

/bioconductor-ideoviz/meta.yaml

Links

biotools: ideoviz, doi: 10.1038/nmeth.3252

Plots data associated with arbitrary genomic intervals along chromosomal ideogram.

package bioconductor-ideoviz

Versions

1.22.0-0, 1.20.0-1, 1.18.0-0, 1.16.0-0, 1.10.0-0

Depends

• bioconductor-biobase >=2.46.0,<2.47.0

• bioconductor-genomeinfodb >=1.22.0,<1.23.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-iranges >=2.20.0,<2.21.0

• bioconductor-rtracklayer >=1.46.0,<1.47.0

• r-base >=3.6,<3.7.0a0

• r-rcolorbrewer

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ideoviz

and update with:

conda update bioconductor-ideoviz

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ideoviz:<tag>

(see bioconductor-ideoviz/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ideoviz/README.html)