recipe bioconductor-iggeneusage

Differential gene usage in immune repertoires

Homepage

https://bioconductor.org/packages/3.11/bioc/html/IgGeneUsage.html

License

file LICENSE

Recipe

/bioconductor-iggeneusage/meta.yaml

Decoding the properties of immune repertoires is key in understanding the response of adaptive immunity to challenges such as viral infection. One important task in immune repertoire profiling is the detection of biases in Ig gene usage between biological conditions. IgGeneUsage is a computational tool for the analysis of differential gene usage in immune repertoires. It employs Bayesian hierarchical models to fit complex gene usage data from immune repertoire sequencing experiments and quantifies Ig gene usage biases as probabilities.

package bioconductor-iggeneusage

(downloads) docker_bioconductor-iggeneusage

Versions

1.2.1-01.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-iggeneusage

and update with:

conda update bioconductor-iggeneusage

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-iggeneusage:<tag>

(see bioconductor-iggeneusage/tags for valid values for <tag>)