recipe bioconductor-illuminahumanmethylationepicv2manifest

Manifest for Illumina's EPIC v2.0 methylation arrays

Homepage:

https://bioconductor.org/packages/3.20/data/annotation/html/IlluminaHumanMethylationEPICv2manifest.html

License:

Artistic-2.0

Recipe:

/bioconductor-illuminahumanmethylationepicv2manifest/meta.yaml

A manifest package for Illumina's EPIC v2.0 methylation arrays. The version 2 covers more than 935K CpG sites in the human genome hg38. It is an update of the original EPIC v1.0 array (i.e., the 850K methylation array).

package bioconductor-illuminahumanmethylationepicv2manifest

(downloads) docker_bioconductor-illuminahumanmethylationepicv2manifest

versions:

1.0.0-0

depends bioconductor-data-packages:

>=20250625

depends bioconductor-minfi:

>=1.52.0,<1.53.0

depends curl:

depends r-base:

>=4.4,<4.5.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-illuminahumanmethylationepicv2manifest

and update with::

   mamba update bioconductor-illuminahumanmethylationepicv2manifest

To create a new environment, run:

mamba create --name myenvname bioconductor-illuminahumanmethylationepicv2manifest

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-illuminahumanmethylationepicv2manifest:<tag>

(see `bioconductor-illuminahumanmethylationepicv2manifest/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-illuminahumanmethylationepicv2manifest/README.html)