- recipe bioconductor-imcdatasets
Collection of publicly available imaging mass cytometry (IMC) datasets
- Homepage:
https://bioconductor.org/packages/3.16/data/experiment/html/imcdatasets.html
- License:
GPL-3 + file LICENSE
- Recipe:
The imcdatasets package provides access to publicly available IMC datasets. IMC is a technology that enables measurement of > 40 proteins from tissue sections. The generated images can be segmented to extract single cell data. Datasets typically consist of three elements: a SingleCellExperiment object containing single cell data, a CytoImageList object containing multichannel images and a CytoImageList object containing the cell masks that were used to extract the single cell data from the images.
- package bioconductor-imcdatasets¶
-
- Versions:
1.6.0-0
,1.2.0-1
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-cytomapper
>=1.10.0,<1.11.0
bioconductor-data-packages
>=20221108
bioconductor-delayedarray
>=0.24.0,<0.25.0
bioconductor-experimenthub
>=2.6.0,<2.7.0
bioconductor-hdf5array
>=1.26.0,<1.27.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-spatialexperiment
>=1.8.0,<1.9.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-imcdatasets
and update with:
conda update bioconductor-imcdatasets
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-imcdatasets:<tag>
(see bioconductor-imcdatasets/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-imcdatasets/README.html)