- recipe bioconductor-imcdatasets
Collection of publicly available imaging mass cytometry (IMC) datasets
- Homepage:
https://bioconductor.org/packages/3.14/data/experiment/html/imcdatasets.html
- License:
GPL-3
- Recipe:
The imcdatasets package provides access to publicly available IMC datasets. IMC is a technology that enables measurement of > 40 proteins from tissue sections. The generated images can be segmented to extract single cell data. Datasets typically consist of three elements: a SingleCellExperiment object containing single cell data, a CytoImageList object containing multichannel images and a CytoImageList object containing the cell masks that were used to extract the single cell data from the images.
- package bioconductor-imcdatasets¶
-
- Versions:
1.2.0-0
,1.0.0-0
- Depends:
bioconductor-cytomapper
>=1.6.0,<1.7.0
bioconductor-delayedarray
>=0.20.0,<0.21.0
bioconductor-experimenthub
>=2.2.0,<2.3.0
bioconductor-hdf5array
>=1.22.0,<1.23.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-singlecellexperiment
>=1.16.0,<1.17.0
curl
>=7.79.1,<8.0a0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-imcdatasets
and update with:
conda update bioconductor-imcdatasets
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-imcdatasets:<tag>
(see bioconductor-imcdatasets/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-imcdatasets/README.html)