recipe bioconductor-immunespacer

A Thin Wrapper around the ImmuneSpace Data and Tools Portal

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/ImmuneSpaceR.html

License:

GPL-2

Recipe:

/bioconductor-immunespacer/meta.yaml

Provides a convenient API for accessing data sets within ImmuneSpace Data and Tools Portal (datatools.immunespace.org), the data repository and analysis platform of the Human Immunology Project Consortium (HIPC).

package bioconductor-immunespacer

versions:

1.30.0-0,  1.28.0-0,  1.26.0-0,  1.22.0-0,  1.20.0-0,  1.18.1-0,  1.18.0-0,  1.16.0-0,  1.14.0-0, 

1.30.0-0,  1.28.0-0,  1.26.0-0,  1.22.0-0,  1.20.0-0,  1.18.1-0,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.2-0,  1.10.5-0,  1.10.1-0

depends bioconductor-biobase:

>=2.62.0,<2.63.0

depends bioconductor-flowcore:

>=2.14.0,<2.15.0

depends bioconductor-flowworkspace:

>=4.14.0,<4.15.0

depends bioconductor-preprocesscore:

>=1.64.0,<1.65.0

depends r-base:

>=4.3,<4.4.0a0

depends r-curl:

depends r-data.table:

depends r-digest:

depends r-ggplot2:

>=3.2.0

depends r-gplots:

depends r-heatmaply:

>=0.7.0

depends r-httr:

depends r-jsonlite:

depends r-pheatmap:

depends r-plotly:

depends r-r6:

depends r-rlabkey:

>=2.3.1

depends r-rmarkdown:

depends r-scales:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-immunespacer

and update with::

   mamba update bioconductor-immunespacer

To create a new environment, run:

mamba create --name myenvname bioconductor-immunespacer

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-immunespacer:<tag>

(see `bioconductor-immunespacer/tags`_ for valid values for ``<tag>``)

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