- recipe bioconductor-infercnv
Infer Copy Number Variation from Single-Cell RNA-Seq Data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/infercnv.html
- License:
BSD_3_clause + file LICENSE
- Recipe:
Using single-cell RNA-Seq expression to visualize CNV in cells.
- package bioconductor-infercnv¶
-
- Versions:
1.14.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.6.0-0
,1.4.0-0
,1.2.0-0
,1.0.3-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-edger
>=3.40.0,<3.41.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
jags
4.*.*
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-infercnv
and update with:
conda update bioconductor-infercnv
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-infercnv:<tag>
(see bioconductor-infercnv/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-infercnv/README.html)