recipe bioconductor-infercnv

Infer Copy Number Variation from Single-Cell RNA-Seq Data

Homepage

https://bioconductor.org/packages/3.12/bioc/html/infercnv.html

License

BSD_3_clause + file LICENSE

Recipe

/bioconductor-infercnv/meta.yaml

Using single-cell RNA-Seq expression to visualize CNV in cells.

package bioconductor-infercnv

Versions

1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.3-0

Depends

• bioconductor-biocgenerics >=0.36.0,<0.37.0

• bioconductor-edger >=3.32.0,<3.33.0

• bioconductor-singlecellexperiment >=1.12.0,<1.13.0

• bioconductor-summarizedexperiment >=1.20.0,<1.21.0

• jags 4.*.*

• r-ape

• r-argparse

• r-base >=4.0,<4.1.0a0

• r-catools

• r-coda

• r-coin

• r-digest

• r-doparallel

• r-dplyr

• r-fastcluster

• r-fitdistrplus

• r-foreach

• r-futile.logger

• r-future

• r-ggplot2

• r-gplots

• r-gridextra

• r-hiddenmarkov

• r-matrix

• r-rcolorbrewer

• r-reshape

• r-rjags

• r-tidyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-infercnv

and update with:

conda update bioconductor-infercnv

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-infercnv:<tag>

(see bioconductor-infercnv/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-infercnv/README.html)