- recipe bioconductor-infercnv
Infer Copy Number Variation from Single-Cell RNA-Seq Data
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/infercnv.html
- License
BSD_3_clause + file LICENSE
- Recipe
Using single-cell RNA-Seq expression to visualize CNV in cells.
- package bioconductor-infercnv¶
-
- Versions
1.10.0-0
,1.8.0-0
,1.6.0-1
,1.6.0-0
,1.4.0-0
,1.2.0-0
,1.0.3-0
- Depends
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-edger
>=3.36.0,<3.37.0
bioconductor-singlecellexperiment
>=1.16.0,<1.17.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
jags
4.*.*
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-infercnv
and update with:
conda update bioconductor-infercnv
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-infercnv:<tag>
(see bioconductor-infercnv/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-infercnv/README.html)