recipe bioconductor-interaccircos

The Generation of Interactive Circos Plot

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/interacCircos.html

License:

GPL-3

Recipe:

/bioconductor-interaccircos/meta.yaml

Implement in an efficient approach to display the genomic data, relationship, information in an interactive circular genome(Circos) plot. 'interacCircos' are inspired by 'circosJS', 'BioCircos.js' and 'NG-Circos' and we integrate the modules of 'circosJS', 'BioCircos.js' and 'NG-Circos' into this R package, based on 'htmlwidgets' framework.

package bioconductor-interaccircos

(downloads) docker_bioconductor-interaccircos

versions:

1.12.0-0,  1.10.0-0,  1.8.0-0,  1.4.0-0,  1.2.0-0

depends r-base:

>=4.3,<4.4.0a0

depends r-htmlwidgets:

depends r-plyr:

depends r-rcolorbrewer:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-interaccircos

and update with::

   mamba update bioconductor-interaccircos

To create a new environment, run:

mamba create --name myenvname bioconductor-interaccircos

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-interaccircos:<tag>

(see `bioconductor-interaccircos/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-interaccircos/README.html)