recipe bioconductor-ipac

Identification of Protein Amino acid Clustering

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/iPAC.html

License:

GPL-2

Recipe:

/bioconductor-ipac/meta.yaml

Links:

biotools: ipac, doi: 10.1186/1471-2105-14-190

iPAC is a novel tool to identify somatic amino acid mutation clustering within proteins while taking into account protein structure.

package bioconductor-ipac

Versions:

1.42.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.26.0-1, 

1.42.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.26.0-1,  1.26.0-0,  1.24.2-0,  1.22.0-0

Depends:

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-multtest >=2.54.0,<2.55.0

• r-base >=4.2,<4.3.0a0

• r-gdata

• r-scatterplot3d

Required By:

• bioconductor-graphpac

• bioconductor-spacepac

• bioconductor-quartpac

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ipac

and update with:

conda update bioconductor-ipac

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ipac:<tag>

(see bioconductor-ipac/tags for valid values for <tag>)

Download stats

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