Package Recipe 'bioconductor-iranges'

recipe bioconductor-iranges

Foundation of integer range manipulation in Bioconductor

Homepage: https://bioconductor.org/packages/3.13/bioc/html/IRanges.html
License: Artistic-2.0
Recipe: /bioconductor-iranges/meta.yaml
Links: biotools: iranges

Provides efficient low-level and highly reusable S4 classes for storing, manipulating and aggregating over annotated ranges of integers. Implements an algebra of range operations, including efficient algorithms for finding overlaps and nearest neighbors. Defines efficient list-like classes for storing, transforming and aggregating large grouped data, i.e., collections of atomic vectors and DataFrames.

package bioconductor-iranges¶

Versions

2.26.0-0, 2.24.1-0, 2.24.0-0, 2.22.1-0, 2.20.0-0, 2.18.2-0, 2.18.1-0, 2.16.0-0, 2.14.12-0,

2.26.0-0, 2.24.1-0, 2.24.0-0, 2.22.1-0, 2.20.0-0, 2.18.2-0, 2.18.1-0, 2.16.0-0, 2.14.12-0, 2.12.0-0, 2.10.5-0, 2.8.2-0, 2.8.0-0, 2.6.1-0, 2.6.0-0, 2.4.8-0, 2.4.7-0, 2.4.6-0, 2.4.1-0, 2.4.0-0, 2.2.9-0

Depends

bioconductor-biocgenerics >=0.38.0,<0.39.0
bioconductor-s4vectors >=0.30.0,<0.31.0
libblas >=3.8.0,<4.0a0
libgcc-ng >=9.3.0
liblapack >=3.8.0,<4.0a0
r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-iranges

and update with:

conda update bioconductor-iranges

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-iranges:<tag>

(see bioconductor-iranges/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-iranges/README.html)