recipe bioconductor-iranges

Foundation of integer range manipulation in Bioconductor

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/IRanges.html

License:

Artistic-2.0

Recipe:

/bioconductor-iranges/meta.yaml

Links:

biotools: iranges

Provides efficient low-level and highly reusable S4 classes for storing, manipulating and aggregating over annotated ranges of integers. Implements an algebra of range operations, including efficient algorithms for finding overlaps and nearest neighbors. Defines efficient list-like classes for storing, transforming and aggregating large grouped data, i.e., collections of atomic vectors and DataFrames.

package bioconductor-iranges

versions:

2.36.0-2,  2.36.0-1,  2.36.0-0,  2.34.1-0,  2.32.0-1,  2.32.0-0,  2.28.0-2,  2.28.0-1,  2.28.0-0, 

2.36.0-2,  2.36.0-1,  2.36.0-0,  2.34.1-0,  2.32.0-1,  2.32.0-0,  2.28.0-2,  2.28.0-1,  2.28.0-0,  2.26.0-0,  2.24.1-0,  2.24.0-0,  2.22.1-0,  2.20.0-0,  2.18.2-0,  2.18.1-0,  2.16.0-0,  2.14.12-0,  2.12.0-0,  2.10.5-0,  2.8.2-0,  2.8.0-0,  2.6.1-0,  2.6.0-0,  2.4.8-0,  2.4.7-0,  2.4.6-0,  2.4.1-0,  2.4.0-0,  2.2.9-0

depends bioconductor-biocgenerics:

>=0.48.0,<0.49.0

depends bioconductor-biocgenerics:

>=0.48.1,<0.49.0a0

depends bioconductor-s4vectors:

>=0.40.0,<0.41.0

depends bioconductor-s4vectors:

>=0.40.2,<0.41.0a0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc-ng:

>=12

depends liblapack:

>=3.9.0,<4.0a0

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-iranges

and update with::

   mamba update bioconductor-iranges

To create a new environment, run:

mamba create --name myenvname bioconductor-iranges

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-iranges:<tag>

(see `bioconductor-iranges/tags`_ for valid values for ``<tag>``)

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