recipe bioconductor-isee

Provides functions for creating an interactive Shiny-based graphical user interface for exploring data stored in SummarizedExperiment objects, including row- and column-level metadata. Particular attention is given to single-cell data in a SingleCellExperiment object with visualization of dimensionality reduction results.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/iSEE.html

License

MIT + file LICENSE

Recipe

/bioconductor-isee/meta.yaml

package bioconductor-isee

(downloads) docker_bioconductor-isee

Versions

1.2.0-0, 1.0.1-0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-singlecellexperiment

>=1.4.0,<1.5.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-colourpicker

Depends r-cowplot

Depends r-dplyr

Depends r-dt

Depends r-ggplot2

Depends r-igraph

Depends r-mgcv

Depends r-rentrez

Depends r-reshape2

Depends r-rintrojs

Depends r-scales

Depends r-shiny

Depends r-shinyace

Depends r-shinydashboard

Depends r-shinyjs

Depends r-vipor

Depends r-viridislite

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-isee

and update with:

conda update bioconductor-isee

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-isee:<tag>

(see bioconductor-isee/tags for valid values for <tag>)